If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ), 'gf_id' => 'HOM05D000769', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000769' ), 'data_identifier' => 'HOM05D000769', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000769', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33110' => 'bna', 'A03p24880' => 'bna', 'A03p24990' => 'bna', 'A03p47260' => 'bna', 'A03p47270' => 'bna', 'A04p33440' => 'bna', 'A05p04910' => 'bna', 'A05p05160' => 'bna', 'A05p26900' => 'bna', 'A05p42300' => 'bna', 'A07p25150' => 'bna', 'A09p52790' => 'bna', 'A09p54940' => 'bna', 'A10p29190' => 'bna', 'Aa31LG10G14830' => 'aar', 'Aa31LG10G16960' => 'aar', 'Aa31LG11G1810' => 'aar', 'Aa31LG1G26280' => 'aar', 'Aa31LG1G26660' => 'aar', 'Aa31LG5G15730' => 'aar', 'Aa31LG8G8430' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2864' => 'aag', 'Actinidia00753' => 'ach', 'Actinidia05777' => 'ach', 'Actinidia09133' => 'ach', 'Actinidia12179' => 'ach', 'Actinidia12639' => 'ach', 'Actinidia13621' => 'ach', 'Actinidia22768' => 'ach', 'Actinidia23631' => 'ach', 'Actinidia30508' => 'ach', 'Actinidia39287' => 'ach', 'Ah.05g177780' => 'amhyb', 'Ah.06g189310' => 'amhyb', 'Ah.08g221890' => 'amhyb', 'Ah.09g228810' => 'amhyb', 'Ah.15g091920' => 'amhyb', 'AL3G15770' => 'aly', 'AL3G36030' => 'aly', 'AL3G36064' => 'aly', 'AL4G43810' => 'aly', 'AL4G44170' => 'aly', 'AL5G42870' => 'aly', 'AL5G45960' => 'aly', 'AL653U10010' => 'aly', 'AL6G17750' => 'aly', 'AL766U10010' => 'aly', 'Aqoxy2G03337' => 'aox', 'Aqoxy3G02669' => 'aox', 'Aqoxy4G02094' => 'aox', 'Aqoxy5G03869' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0ZFN4L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DVHD2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH5PSR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP407S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZF89W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JX4N9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP5FG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRC0V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SEKT8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7RMNS' => 'arhy', 'AT2G44740' => 'ath', 'AT2G45080' => 'ath', 'AT3G05327' => 'ath', 'AT3G21870' => 'ath', 'AT3G60550' => 'ath', 'AT3G63120' => 'ath', 'AT5G07450' => 'ath', 'AT5G61650' => 'ath', 'ATR0317G097' => 'atr', 'ATR0626G111' => 'atr', 'ATR0665G051' => 'atr', 'ATR0804G024' => 'atr', 'Atru.chr1.929' => 'acertr', 'Atru.chr2.416' => 'acertr', 'Atru.chr2.417' => 'acertr', 'Atru.chr5.103' => 'acertr', 'Atru.chr5.1439' => 'acertr', 'Atru.chr5.223' => 'acertr', 'Atru.chr6.3150' => 'acertr', 'AUR62000834' => 'cqu', 'AUR62005140' => 'cqu', 'AUR62013692' => 'cqu', 'AUR62013763' => 'cqu', 'AUR62023391' => 'cqu', 'AUR62027579' => 'cqu', 'AUR62035780' => 'cqu', 'AUR62040026' => 'cqu', 'AUR62043697' => 'cqu', 'AUR62044740' => 'cqu', 'BcaB01g03296' => 'bca', 'BcaB02g07406' => 'bca', 'BcaB02g08855' => 'bca', 'BcaB02g08955' => 'bca', 'BcaB02g08956' => 'bca', 'BcaB06g26289' => 'bca', 'BcaB06g29395' => 'bca', 'BcaC01g05162' => 'bca', 'BcaC01g05197' => 'bca', 'BcaC02g07107' => 'bca', 'BcaC02g07108' => 'bca', 'BcaC02g12252' => 'bca', 'BcaC02g12253' => 'bca', 'BcaC02g12274' => 'bca', 'BcaC05g30017' => 'bca', 'BcaC05g30137' => 'bca', 'BcaC06g32436' => 'bca', 'BcaC06g32437' => 'bca', 'BcaC06g32476' => 'bca', 'BcaC06g33140' => 'bca', 'BcaC06g33141' => 'bca', 'BcaC06g33258' => 'bca', 'BcaC07g40578' => 'bca', 'BcaC07g40792' => 'bca', 'BcaC07g42708' => 'bca', 'BcaC08g45075' => 'bca', 'BcaC09g49123' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00180' => 'bna', 'BolC1t04189H' => 'bol', 'BolC1t05701H' => 'bol', 'BolC3t15315H' => 'bol', 'BolC3t15328H' => 'bol', 'BolC4t22203H' => 'bol', 'BolC4t22231H' => 'bol', 'BolC4t28623H' => 'bol', 'BolC5t32889H' => 'bol', 'BolC5t34848H' => 'bol', 'BolC5t34849H' => 'bol', 'BolC6t37858H' => 'bol', 'BolC7t45059H' => 'bol', 'BolC8t51144H' => 'bol', 'BolC8t51363H' => 'bol', 'BolC9t59701H' => 'bol', 'BraA01t03434Z' => 'bra', 'BraA03t11695Z' => 'bra', 'BraA03t11702Z' => 'bra', 'BraA03t13853Z' => 'bra', 'BraA04t18806Z' => 'bra', 'BraA05t19465Z' => 'bra', 'BraA05t19490Z' => 'bra', 'BraA05t21570Z' => 'bra', 'BraA05t23023Z' => 'bra', 'BraA07t30157Z' => 'bra', 'BraA09t40711Z' => 'bra', 'BraA09t40903Z' => 'bra', 'BraA10t44966Z' => 'bra', 'BraSC132t45511Z' => 'bra', 'C01p42340' => 'bna', 'C03p29670' => 'bna', 'C03p29820' => 'bna', 'C04p05730' => 'bna', 'C04p06010' => 'bna', 'C04p71200' => 'bna', 'C05p41510' => 'bna', 'C05p61890' => 'bna', 'C06p26840' => 'bna', 'C07p45390' => 'bna', 'C08p35520' => 'bna', 'C08p37850' => 'bna', 'C09p69580' => 'bna', 'CAN.G1034.4' => 'can', 'CAN.G1585.4' => 'can', 'CAN.G232.2' => 'can', 'CAN.G899.6' => 'can', 'CAN.G921.3' => 'can', 'CANSAT21G1835' => 'cansat', 'CANSAT25G1716' => 'cansat', 'CANSAT25G2182' => 'cansat', 'CANSAT54G2585' => 'cansat', 'CANSAT56G3563' => 'cansat', 'CANSAT64G1339' => 'cansat', 'CARHR079670' => 'chi', 'CARHR097830' => 'chi', 'CARHR139960' => 'chi', 'CARHR140330' => 'chi', 'CARHR170950' => 'chi', 'CARHR173430' => 'chi', 'CARHR205700' => 'chi', 'CARHR275450' => 'chi', 'Carub.0003s0460' => 'cru', 'Carub.0003s2194' => 'cru', 'Carub.0004s2731' => 'cru', 'Carub.0004s2767' => 'cru', 'Carub.0005s2728' => 'cru', 'Carub.0005s2979' => 'cru', 'Carub.0006s0642' => 'cru', 'Carub.0008s2235' => 'cru', 'Ca_08583_v3' => 'car', 'CBR_g46429' => 'cbr', 'Cc01_g19450' => 'ccan', 'Cc02_g04880' => 'ccan', 'Cc02_g24650' => 'ccan', 'Cc02_g25260' => 'ccan', 'Cc02_g33470' => 'ccan', 'Cc05_g05150' => 'ccan', 'CDE02G2762' => 'cde', 'CDE05G0852' => 'cde', 'CDE05G1189' => 'cde', 'CDE05G1336' => 'cde', 'CDE11G0779' => 'cde', 'Cfa006582' => 'cfa', 'Cfa011050' => 'cfa', 'Cfa011142' => 'cfa', 'Cfa013598' => 'cfa', 'Cfa023701' => 'cfa', 'Cfa024884' => 'cfa', 'Cfa026114' => 'cfa', 'Cfa026743' => 'cfa', 'Cfa026836' => 'cfa', 'Ciclev10002472m.g' => 'ccl', 'Ciclev10005725m.g' => 'ccl', 'Ciclev10016515m.g' => 'ccl', 'Ciclev10021982m.g' => 'ccl', 'Ciclev10022279m.g' => 'ccl', 'Ciclev10024289m.g' => 'ccl', 'CiPaw.03G163100' => 'cil', 'CiPaw.07G017300' => 'cil', 'CiPaw.07G091900' => 'cil', 'CiPaw.08G042400' => 'cil', 'CiPaw.13G031600' => 'cil', 'CiPaw.14G019300' => 'cil', 'CiPaw.14G024900' => 'cil', 'ClCG02G008430' => 'cla', 'ClCG02G015840' => 'cla', 'ClCG05G002620' => 'cla', 'ClCG06G000680' => 'cla', 'ClCG06G002960' => 'cla', 'ClCG07G017150' => 'cla', 'ClCG09G007060' => 'cla', 'COL.COLO4_09093' => 'col', 'COL.COLO4_12384' => 'col', 'COL.COLO4_12475' => 'col', 'COL.COLO4_13209' => 'col', 'COL.COLO4_13478' => 'col', 'COL.COLO4_13534' => 'col', 'COL.COLO4_33451' => 'col', 'COL.COLO4_37316' => 'col', 'Cpa.g.sc13.237' => 'cpa', 'Cpa.g.sc212.5' => 'cpa', 'Cpa.g.sc370.7' => 'cpa', 'Cpa.g.sc41.82' => 'cpa', 'Cpa.g.sc48.44' => 'cpa', 'Cpa.g.sc8.237' => 'cpa', 'Cre02.g118050' => 'cre', 'CsaV3_2G005220' => 'csa', 'CsaV3_2G035200' => 'csa', 'CsaV3_3G010070' => 'csa', 'CsaV3_4G004350' => 'csa', 'CsaV3_6G006470' => 'csa', 'CsaV3_6G009080' => 'csa', 'CsaV3_7G028110' => 'csa', 'CSS0000939' => 'camsi', 'CSS0014468' => 'camsi', 'CSS0025988' => 'camsi', 'CSS0035543' => 'camsi', 'CSS0037781' => 'camsi', 'CSS0037789' => 'camsi', 'CSS0041021' => 'camsi', 'CSS0044509' => 'camsi', 'CSS0050233' => 'camsi', 'DCAR_002732' => 'dca', 'DCAR_021188' => 'dca', 'DCAR_029417' => 'dca', 'DCAR_029491' => 'dca', 'DCAR_029872' => 'dca', 'Dinv32933' => 'din', 'Dinv34545' => 'din', 'Dinv34754' => 'din', 'Dinv39685' => 'din', 'Dinv40282' => 'din', 'Dinv43605' => 'din', 'Dinv44045' => 'din', 'Dinv44113' => 'din', 'Duzib068G0711' => 'dzi', 'Duzib132G0662' => 'dzi', 'Duzib133G0326' => 'dzi', 'Duzib133G0631' => 'dzi', 'Duzib138G0490' => 'dzi', 'Duzib138G0996' => 'dzi', 'Duzib138G1964' => 'dzi', 'Duzib177G0892' => 'dzi', 'Duzib205G1212' => 'dzi', 'Duzib211G0375' => 'dzi', 'ECA234G2228' => 'eca', 'ECA236G3508' => 'eca', 'ECA238G2712' => 'eca', 'ECA246G3055' => 'eca', 'ECA247G0892' => 'eca', 'ECA248G1114' => 'eca', 'EL10Ac1g00742' => 'bvu', 'EL10Ac1g00827' => 'bvu', 'EL10Ac4g09346' => 'bvu', 'EL10Ac7g17238' => 'bvu', 'EL10Ac8g19753' => 'bvu', 'Eucgr.B01989' => 'egr', 'Eucgr.E01538' => 'egr', 'Eucgr.E01610' => 'egr', 'Eucgr.H01477' => 'egr', 'Eucgr.K00862' => 'egr', 'FAN01G0161' => 'fan', 'FAN01G2023' => 'fan', 'FAN01G2193' => 'fan', 'FAN03G0310' => 'fan', 'FAN03G1335' => 'fan', 'FAN03G2764' => 'fan', 'FAN05G2963' => 'fan', 'FAN05G3243' => 'fan', 'FAN06G0371' => 'fan', 'FAN06G1281' => 'fan', 'FAN06G2392' => 'fan', 'FAN06G3036' => 'fan', 'FAN06G3980' => 'fan', 'FAN09G2320' => 'fan', 'FAN10G0597' => 'fan', 'FAN10G1601' => 'fan', 'FAN10G2398' => 'fan', 'FAN10G2972' => 'fan', 'FAN10G3612' => 'fan', 'FAN14G1469' => 'fan', 'FAN14G5184' => 'fan', 'FAN15G2225' => 'fan', 'FAN20G1828' => 'fan', 'FAN24G3090' => 'fan', 'FAN27G1140' => 'fan', 'FvH4_2g23550' => 'fve', 'FvH4_3g31690' => 'fve', 'FvH4_3g46120' => 'fve', 'FvH4_6g05780' => 'fve', 'FvH4_6g43551' => 'fve', 'FvH4_7g02781' => 'fve', 'FvH4_7g09340' => 'fve', 'FvH4_7g10850' => 'fve', 'FvH4_7g26790' => 'fve', 'Glyma.01G133900' => 'gma', 'Glyma.03G033900' => 'gma', 'Glyma.03G107800' => 'gma', 'Glyma.03G153800' => 'gma', 'Glyma.07G119100' => 'gma', 'Glyma.09G245400' => 'gma', 'Glyma.11G166337' => 'gma', 'Glyma.12G195900' => 'gma', 'Glyma.13G306600' => 'gma', 'Glyma.16G081700' => 'gma', 'Glyma.18G247800' => 'gma', 'Glyma.19G156200' => 'gma', 'Glyma.19G235700' => 'gma', 'Gohir.A03G163500' => 'ghi', 'Gohir.A08G057400' => 'ghi', 'Gohir.A08G066900' => 'ghi', 'Gohir.A08G137300' => 'ghi', 'Gohir.A08G139700' => 'ghi', 'Gohir.A08G210700' => 'ghi', 'Gohir.A08G211001' => 'ghi', 'Gohir.A09G248600' => 'ghi', 'Gohir.A11G075000' => 'ghi', 'Gohir.A11G078300' => 'ghi', 'Gohir.A11G122700' => 'ghi', 'Gohir.A12G097800' => 'ghi', 'Gohir.A12G195800' => 'ghi', 'Gohir.D02G186900' => 'ghi', 'Gohir.D08G066700' => 'ghi', 'Gohir.D08G075500' => 'ghi', 'Gohir.D08G158100' => 'ghi', 'Gohir.D08G160701' => 'ghi', 'Gohir.D08G227500' => 'ghi', 'Gohir.D09G249600' => 'ghi', 'Gohir.D11G079600' => 'ghi', 'Gohir.D11G079700' => 'ghi', 'Gohir.D11G082800' => 'ghi', 'Gohir.D11G128000' => 'ghi', 'Gohir.D12G098000' => 'ghi', 'Gohir.D12G100800' => 'ghi', 'Gohir.D12G198600' => 'ghi', 'Gorai.004G069300' => 'gra', 'Gorai.004G079800' => 'gra', 'Gorai.004G164400' => 'gra', 'Gorai.004G167000' => 'gra', 'Gorai.004G241700' => 'gra', 'Gorai.005G209200' => 'gra', 'Gorai.006G273900' => 'gra', 'Gorai.007G085300' => 'gra', 'Gorai.007G088400' => 'gra', 'Gorai.007G136900' => 'gra', 'Gorai.008G106800' => 'gra', 'Gorai.008G109700' => 'gra', 'Gorai.008G213300' => 'gra', 'GSVIVG01000045001' => 'vvi', 'GSVIVG01011079001' => 'vvi', 'GSVIVG01013879001' => 'vvi', 'GSVIVG01018166001' => 'vvi', 'GSVIVG01018304001' => 'vvi', 'GSVIVG01030626001' => 'vvi', 'GSVIVG01031258001' => 'vvi', 'HanXRQChr01g0003121' => 'han', 'HanXRQChr01g0017691' => 'han', 'HanXRQChr04g0123331' => 'han', 'HanXRQChr06g0168921' => 'han', 'HanXRQChr07g0205621' => 'han', 'HanXRQChr15g0479171' => 'han', 'HanXRQChr16g0519731' => 'han', 'HanXRQChr16g0521061' => 'han', 'HanXRQChr17g0568181' => 'han', 'Haze_02717' => 'cav', 'Haze_02869' => 'cav', 'Haze_02870' => 'cav', 'Haze_04201' => 'cav', 'Haze_04708' => 'cav', 'Haze_12900' => 'cav', 'Haze_22218' => 'cav', 'Hma1.2p1_0257F.1_g103390' => 'hma', 'Hma1.2p1_0613F.1_g189180' => 'hma', 'Hma1.2p1_0928F.1_g237830' => 'hma', 'HPP92_003159' => 'vpl', 'HPP92_012971' => 'vpl', 'HPP92_020682' => 'vpl', 'HPP92_022322' => 'vpl', 'HPP92_022330' => 'vpl', 'HPP92_027152' => 'vpl', 'Hund17051' => 'sun', 'Hund17110' => 'sun', 'Hund17997' => 'sun', 'Hund21692' => 'sun', 'Hund27381' => 'sun', 'Lalb_Chr01g0020151' => 'lal', 'Lalb_Chr01g0021471' => 'lal', 'Lalb_Chr01g0021671' => 'lal', 'Lalb_Chr03g0040601' => 'lal', 'Lalb_Chr12g0207831' => 'lal', 'Lalb_Chr19g0127451' => 'lal', 'Lalb_Chr24g0393081' => 'lal', 'Lj1C972T6' => 'lonja', 'Lj1C973T10' => 'lonja', 'Lj1g0003902' => 'lja', 'Lj1g0010934' => 'lja', 'Lj1g0019536' => 'lja', 'Lj2C1172T10' => 'lonja', 'Lj3g0008396' => 'lja', 'Lj3g0018799' => 'lja', 'Lj3g0024484' => 'lja', 'Lj8A122T59' => 'lonja', 'Lj9A564G19' => 'lonja', 'Lj9C553T17' => 'lonja', 'Lsat_1_v5_gn_1_84401' => 'lsa', 'Lsat_1_v5_gn_2_127141' => 'lsa', 'Lsat_1_v5_gn_3_43761' => 'lsa', 'Lsat_1_v5_gn_4_44440' => 'lsa', 'Lsat_1_v5_gn_5_188201' => 'lsa', 'Lsat_1_v5_gn_7_10081' => 'lsa', 'Lsat_1_v5_gn_9_3660' => 'lsa', 'Manes.01G269600' => 'mes', 'Manes.01G273500' => 'mes', 'Manes.05G049800' => 'mes', 'Manes.05G056500' => 'mes', 'Manes.05G076700' => 'mes', 'Manes.06G130300' => 'mes', 'Manes.08G121100' => 'mes', 'Manes.13G073200' => 'mes', 'Manes.14G039900' => 'mes', 'Mapoly0100s0039' => 'mpo', 'Mapoly0199s0006' => 'mpo', 'MBI02_g18406_MAGBIO' => 'mbi', 'MBI04_g13846_MAGBIO' => 'mbi', 'MBI17_g09113_MAGBIO' => 'mbi', 'MD02G1219700' => 'mdo', 'MD03G1264800' => 'mdo', 'MD07G1097400' => 'mdo', 'MD07G1113400' => 'mdo', 'MD09G1104900' => 'mdo', 'MD09G1174100' => 'mdo', 'MD11G1285000' => 'mdo', 'MD17G1092600' => 'mdo', 'Medtr2g088860' => 'mtr', 'Medtr4g028060' => 'mtr', 'Medtr7g081130' => 'mtr', 'Medtr7g094880' => 'mtr', 'Medtr8g007380' => 'mtr', 'MELO3C004272.2' => 'cme', 'MELO3C006228.2' => 'cme', 'MELO3C015833.2' => 'cme', 'MELO3C017631.2' => 'cme', 'MELO3C019234.2' => 'cme', 'MELO3C022234.2' => 'cme', 'MELO3C022473.2' => 'cme', 'Migut.B01506' => 'egut', 'Migut.B01584' => 'egut', 'Migut.D00298' => 'egut', 'Migut.F00538' => 'egut', 'Migut.H01219' => 'egut', 'Migut.N02057' => 'egut', 'MSTRG.12289' => 'ama', 'MSTRG.12564' => 'ama', 'MSTRG.17120' => 'ama', 'MSTRG.17156' => 'ama', 'MSTRG.18235' => 'ama', 'MSTRG.20672' => 'ama', 'MSTRG.21559' => 'ama', 'MSTRG.28146' => 'ama', 'MSTRG.4938' => 'ama', 'Nitab4.5_0000103g0440' => 'nta', 'Nitab4.5_0000137g0330' => 'nta', 'Nitab4.5_0000458g0060' => 'nta', 'Nitab4.5_0000563g0180' => 'nta', 'Nitab4.5_0000706g0050' => 'nta', 'Nitab4.5_0001026g0010' => 'nta', 'Nitab4.5_0001176g0120' => 'nta', 'Nitab4.5_0001293g0050' => 'nta', 'Nitab4.5_0006749g0010' => 'nta', 'Nitab4.5_0006928g0020' => 'nta', 'Nitab4.5_0007060g0030' => 'nta', 'Nitab4.5_0015379g0010' => 'nta', 'Nn1g00782' => 'nnu', 'Nn1g00984' => 'nnu', 'Nn1g00985' => 'nnu', 'Nn1g02232' => 'nnu', 'Nn1g03666' => 'nnu', 'Nn4g26253' => 'nnu', 'Nn6g33777' => 'nnu', 'Nn6g33948' => 'nnu', 'Nn6g33949' => 'nnu', 'Oeu000002.1' => 'oeu', 'Oeu006081.1' => 'oeu', 'Oeu011082.1' => 'oeu', 'Oeu018079.1' => 'oeu', 'Oeu022157.1' => 'oeu', 'Oeu026428.1' => 'oeu', 'Oeu032190.1' => 'oeu', 'Oeu037437.1' => 'oeu', 'Oeu046441.1' => 'oeu', 'Oeu051916.2' => 'oeu', 'Os02g0125400' => 'osa', 'Os02g0652000' => 'osa', 'Os04g0544200' => 'osa', 'Os04g0552300' => 'osa', 'Os04g0628900' => 'osa', 'Os05g0398000' => 'osa', 'Os10g0563900' => 'osa', 'Peaxi162Scf00007g01226' => 'pax', 'Peaxi162Scf00037g00326' => 'pax', 'Peaxi162Scf00377g00013' => 'pax', 'Peaxi162Scf00641g00815' => 'pax', 'Peaxi162Scf00853g00423' => 'pax', 'Peaxi162Scf01305g00027' => 'pax', 'PGR004G0393' => 'pgr', 'PGR042G1150' => 'pgr', 'PGR083G0941' => 'pgr', 'PGR119G0694' => 'pgr', 'PGR142G2523' => 'pgr', 'PGSC0003DMG400003451' => 'stu', 'PGSC0003DMG400012887' => 'stu', 'PGSC0003DMG400026023' => 'stu', 'PGSC0003DMG400026170' => 'stu', 'PGSC0003DMG400031168' => 'stu', 'PGSC0003DMG400031310' => 'stu', 'PGSC0003DMG400031717' => 'stu', 'Phvul.001G151100' => 'pvu', 'Phvul.005G113500' => 'pvu', 'Phvul.006G092300' => 'pvu', 'Phvul.008G049600' => 'pvu', 'Phvul.008G144200' => 'pvu', 'Phvul.010G044800' => 'pvu', 'Phvul.010G070800' => 'pvu', 'Potri.002G052800' => 'ptr', 'Potri.002G143400' => 'ptr', 'Potri.005G033600' => 'ptr', 'Potri.005G209800' => 'ptr', 'Potri.007G121500' => 'ptr', 'Potri.012G114600' => 'ptr', 'Potri.013G023000' => 'ptr', 'Potri.014G050400' => 'ptr', 'Potri.014G066400' => 'ptr', 'Potri.015G112140' => 'ptr', 'Pp3c20_16040' => 'ppa', 'Pp3c24_6000' => 'ppa', 'Pp3c24_6020' => 'ppa', 'Pp3c8_10460' => 'ppa', 'Pp3c8_11940' => 'ppa', 'Prupe.2G121600' => 'ppe', 'Prupe.2G136400' => 'ppe', 'Prupe.2G271100' => 'ppe', 'Prupe.3G220600' => 'ppe', 'Prupe.6G140600' => 'ppe', 'Prupe.6G326500' => 'ppe', 'Prupe.8G240800' => 'ppe', 'Psat3g064240' => 'psa', 'Psat3g099800' => 'psa', 'Psat3g099920' => 'psa', 'Psat3g155320' => 'psa', 'Psat5g265360' => 'psa', 'Psat7g235040' => 'psa', 'PSO063G5417' => 'pso', 'PSO063G6610' => 'pso', 'PSO170G0293' => 'pso', 'PSO210G3720' => 'pso', 'PSO302G0280' => 'pso', 'PSO541G4357' => 'pso', 'PSO675G8540' => 'pso', 'PSO782G2352' => 'pso', 'PSO782G4349' => 'pso', 'PSO832G3034' => 'pso', 'QL03p006925' => 'qlo', 'QL04p029034' => 'qlo', 'QL04p035968' => 'qlo', 'QL08p033854' => 'qlo', 'QL09p027639' => 'qlo', 'QL12p021784' => 'qlo', 'RcHm_v2.0_Chr1g0345981' => 'rch', 'RcHm_v2.0_Chr1g0348831' => 'rch', 'RcHm_v2.0_Chr1g0373481' => 'rch', 'RcHm_v2.0_Chr2g0160131' => 'rch', 'RcHm_v2.0_Chr3g0454701' => 'rch', 'RcHm_v2.0_Chr6g0291021' => 'rch', 'Rhsim03G0159300' => 'rsi', 'Rhsim06G0157900' => 'rsi', 'Rhsim07G0032200' => 'rsi', 'Rhsim07G0037900' => 'rsi', 'Rhsim13G0025000' => 'rsi', 'Sabra02G0042900' => 'sbr', 'Sabra02G0111800' => 'sbr', 'Sabra05G0035700' => 'sbr', 'Sabra05G0159800' => 'sbr', 'Sabra12G0083800' => 'sbr', 'Sabra13G0025000' => 'sbr', 'Sabra14G0035800' => 'sbr', 'Sabra14G0037900' => 'sbr', 'Sabra14G0046400' => 'sbr', 'Sabra15G0133900' => 'sbr', 'SalBow1G1108' => 'sbo', 'SalBow3G1293' => 'sbo', 'SalBow4G0215' => 'sbo', 'SalBow5G4307' => 'sbo', 'SalBow5G5514' => 'sbo', 'SalBow6G2825' => 'sbo', 'Sc02g0003180' => 'sci', 'Sc05g0004800' => 'sci', 'Sc23g0003850' => 'sci', 'Sed0001169' => 'sed', 'Sed0002188' => 'sed', 'Sed0002803' => 'sed', 'Sed0007492' => 'sed', 'Sed0009019' => 'sed', 'Sed0011661' => 'sed', 'Sed0011805' => 'sed', 'Sed0011809' => 'sed', 'Sed0015113' => 'sed', 'Sed0020140' => 'sed', 'Sed0026736' => 'sed', 'SEGI_02740' => 'sgi', 'SEGI_04131' => 'sgi', 'SEGI_06043' => 'sgi', 'SEGI_12522' => 'sgi', 'SEGI_12670' => 'sgi', 'SEGI_14090' => 'sgi', 'SEGI_19109' => 'sgi', 'SEGI_19704' => 'sgi', 'SEGI_21335' => 'sgi', 'SEGI_24218' => 'sgi', 'SEGI_24875' => 'sgi', 'SEGI_26587' => 'sgi', 'SEGI_28113' => 'sgi', 'SEGI_29118' => 'sgi', 'SEGI_30030' => 'sgi', 'SEGI_31516' => 'sgi', 'SEGI_36523' => 'sgi', 'SEGI_40174' => 'sgi', 'SGA_v2.0_scaffold1284G53896' => 'sas', 'SGA_v2.0_scaffold138G35340' => 'sas', 'SGA_v2.0_scaffold153G36963' => 'sas', 'SGA_v2.0_scaffold159G37581' => 'sas', 'SGA_v2.0_scaffold340G49336' => 'sas', 'SGA_v2.0_scaffold44G16586' => 'sas', 'SGA_v2.0_scaffold52G19254' => 'sas', 'SGA_v2.0_scaffold60G20843' => 'sas', 'SGA_v2.0_scaffold81G25997' => 'sas', 'SMO269G0010' => 'smo', 'SMO343G0023' => 'smo', 'Solyc01g089850.4' => 'sly', 'Solyc01g090800.3' => 'sly', 'Solyc01g098930.3' => 'sly', 'Solyc03g093790.3' => 'sly', 'Solyc07g052610.3' => 'sly', 'Solyc09g065200.4' => 'sly', 'Sopen01g035690' => 'spe', 'Sopen01g036530' => 'spe', 'Sopen01g042470' => 'spe', 'Sopen03g024690' => 'spe', 'Sopen07g026220' => 'spe', 'Sopen09g026930' => 'spe', 'Sp2g24860' => 'spa', 'Sp3g04190' => 'spa', 'Sp3g19840' => 'spa', 'Sp4g26810' => 'spa', 'Sp4g27140' => 'spa', 'Sp5g00420' => 'spa', 'Sp5g02670' => 'spa', 'Sp6g35420' => 'spa', 'TAR362G0134' => 'tar', 'TAR374G0700' => 'tar', 'TAR375G0917' => 'tar', 'TAR375G1120' => 'tar', 'TAR627G0891' => 'tar', 'TAR633G1542' => 'tar', 'TAR636G2123' => 'tar', 'THA.LOC104801652' => 'tha', 'THA.LOC104802472' => 'tha', 'THA.LOC104802501' => 'tha', 'THA.LOC104808498' => 'tha', 'THA.LOC104817185' => 'tha', 'THA.LOC104817215' => 'tha', 'THA.LOC104818300' => 'tha', 'THA.LOC104818695' => 'tha', 'THA.LOC104823050' => 'tha', 'Thecc.01G279100' => 'tca', 'Thecc.01G385100' => 'tca', 'Thecc.01G398000' => 'tca', 'Thecc.02G162500' => 'tca', 'Thecc.03G146200' => 'tca', 'Thecc.05G304300' => 'tca', 'Thhalv10001623m.g' => 'esa', 'Thhalv10001641m.g' => 'esa', 'Thhalv10005388m.g' => 'esa', 'Thhalv10006204m.g' => 'esa', 'Thhalv10006220m.g' => 'esa', 'Thhalv10021509m.g' => 'esa', 'Thhalv10021524m.g' => 'esa', 'TPR.G19461' => 'tpr', 'TPR.G25214' => 'tpr', 'TPR.G32135' => 'tpr', 'TPR.G34773' => 'tpr', 'TPR.G39065' => 'tpr', 'TPR.G4218' => 'tpr', 'TPR.G4948' => 'tpr', 'TPR.G9928' => 'tpr', 'TWI14G1090' => 'twi', 'TWI14G1123' => 'twi', 'TWI14G1205' => 'twi', 'TWI23G0393' => 'twi', 'TWI23G0526' => 'twi', 'TWI23G0890' => 'twi', 'TWI36G0024' => 'twi', 'TWI59G0505' => 'twi', 'unitig_0.g1337' => 'ugi', 'unitig_744.g24626' => 'ugi', 'unitig_750.g28396' => 'ugi', 'unitig_76.g29078' => 'ugi', 'vmacro02572' => 'vma', 'vmacro06846' => 'vma', 'vmacro12229' => 'vma', 'vmacro13453' => 'vma', 'vmacro13515' => 'vma', 'vmacro22606' => 'vma', 'VMungo0331G0673' => 'vmu', 'VMungo0331G1162' => 'vmu', 'VMungo0540G2157' => 'vmu', 'VMungo1080G1525' => 'vmu', 'VMungo1127G1492' => 'vmu', 'VMungo1383G0978' => 'vmu', 'VMungo1383G1302' => 'vmu', 'VMungo1383G2868' => 'vmu', 'Zm00001eb023840' => 'zma', 'Zm00001eb074600' => 'zma', 'Zm00001eb075130' => 'zma', 'Zm00001eb249100' => 'zma', 'Zm00001eb287520' => 'zma', 'Zm00001eb431420' => 'zma' ) $gf_id = 'HOM05D000769' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000769' ) $data_identifier = 'HOM05D000769' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 1, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 13, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 11, 'sgi' => (int) 18, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431420' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1